HL_5ON6_244

3D structure

PDB id

5ON6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of haemanthamine bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGCCCAUUCGGGUCU

Length

16 nucleotides

Bulged bases

5ON6|1|6|G|488, 5ON6|1|6|C|489, 5ON6|1|6|U|493, 5ON6|1|6|U|494, 5ON6|1|6|C|495

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ON6_244 not in the Motif Atlas

Homologous match to HL_8P9A_234

Geometric discrepancy: 0.2303

The information below is about HL_8P9A_234

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89498.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5ON6|1|6|G|486
5ON6|1|6|G|487
5ON6|1|6|G|488
5ON6|1|6|C|489
5ON6|1|6|C|490
5ON6|1|6|C|491
5ON6|1|6|A|492
5ON6|1|6|U|493
5ON6|1|6|U|494
5ON6|1|6|C|495
5ON6|1|6|G|496
5ON6|1|6|G|497
5ON6|1|6|G|498
5ON6|1|6|U|499
5ON6|1|6|C|500
5ON6|1|6|U|501

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain e0

40S ribosomal protein S30-A

Chain s9

40S ribosomal protein S9-A