HL_5ON6_249

3D structure

PDB id

5ON6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of haemanthamine bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AGAAGGGGGCAACUCCAUCU

Length

20 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ON6_249 not in the Motif Atlas

Homologous match to HL_8P9A_224

Geometric discrepancy: 0.3752

The information below is about HL_8P9A_224

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52616.1

Basepair signature

cWW-cWH-cHW-F-cWH-cHW-F-F-tHH-cWH-tWW-cWH-F-tWW-cWH-F-cWH

Number of instances in this motif group

1

Unit IDs

5ON6|1|A|A|1691
5ON6|1|A|G|1692
5ON6|1|A|A|1693
5ON6|1|A|A|1694
5ON6|1|A|G|1695
5ON6|1|A|G|1696
5ON6|1|A|G|1697
5ON6|1|A|G|1698
5ON6|1|A|G|1699
5ON6|1|A|C|1700
5ON6|1|A|A|1701
5ON6|1|A|A|1702
5ON6|1|A|C|1703
5ON6|1|A|U|1704
5ON6|1|A|C|1705
5ON6|1|A|C|1706
5ON6|1|A|A|1707
5ON6|1|A|U|1708
5ON6|1|A|C|1709
5ON6|1|A|U|1710

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain 7

60S ribosomal protein L24-A

Chain H

40S ribosomal protein S6-A