HL_5OOM_008

3D structure

PDB id

5OOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GCGACAAAC

Length

9 nucleotides

Bulged bases

5OOM|1|A|A|1991, 5OOM|1|A|A|1994

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OOM_008 not in the Motif Atlas

Geometric match to HL_5TBW_021

Geometric discrepancy: 0.2497

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5OOM|1|A|G|1988
5OOM|1|A|C|1989
5OOM|1|A|G|1990
5OOM|1|A|A|1991
5OOM|1|A|C|1992
5OOM|1|A|A|1993
5OOM|1|A|A|1994
5OOM|1|A|A|1995
5OOM|1|A|C|1996

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

39S ribosomal protein L2, mitochondrial