HL_5OOM_011

3D structure

PDB id

5OOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GGAACAGC

Length

8 nucleotides

Bulged bases

5OOM|1|A|A|2110, 5OOM|1|A|G|2113

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OOM_011 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.1976

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

5OOM|1|A|G|2107
5OOM|1|A|G|2108
5OOM|1|A|A|2109
5OOM|1|A|A|2110
5OOM|1|A|C|2111
5OOM|1|A|A|2112
5OOM|1|A|G|2113
5OOM|1|A|C|2114

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain I

39S ribosomal protein L10, mitochondrial

Chain N

39S ribosomal protein L16, mitochondrial