HL_5OOM_013

3D structure

PDB id

5OOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CCUAAAAGCAG

Length

11 nucleotides

Bulged bases

5OOM|1|A|A|2181

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OOM_013 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.272

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5OOM|1|A|C|2175
5OOM|1|A|C|2176
5OOM|1|A|U|2177
5OOM|1|A|A|2178
5OOM|1|A|A|2179
5OOM|1|A|A|2180
5OOM|1|A|A|2181
5OOM|1|A|G|2182
5OOM|1|A|C|2183
5OOM|1|A|A|2184
5OOM|1|A|G|2185

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain J

39S ribosomal protein L11, mitochondrial

Chain t

Unknown protein or protein extension