HL_5OPT_007

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUUGAUUC

Length

8 nucleotides

Bulged bases

5OPT|1|E|U|297

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OPT_007 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.3686

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5OPT|1|E|G|291
5OPT|1|E|U|292
5OPT|1|E|U|293
5OPT|1|E|G|294
5OPT|1|E|A|295
5OPT|1|E|U|296
5OPT|1|E|U|297
5OPT|1|E|C|298

Current chains

Chain E

18S rRNA

Nearby chains

Chain L

40S ribosomal protein S4

Chain P

40S ribosomal protein S6

Chain X

40S ribosomal protein S11, putative