HL_5OPT_009
3D structure
- PDB id
- 5OPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of KSRP in context of Trypanosoma cruzi 40S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UGUAGUGGA
- Length
- 9 nucleotides
- Bulged bases
- 5OPT|1|E|G|385
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5OPT_009 not in the Motif Atlas
- Homologous match to HL_4V88_193
- Geometric discrepancy: 0.1464
- The information below is about HL_4V88_193
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_82182.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 19
Unit IDs
5OPT|1|E|U|378
5OPT|1|E|G|379
5OPT|1|E|U|380
5OPT|1|E|A|381
5OPT|1|E|G|382
5OPT|1|E|U|383
5OPT|1|E|G|384
5OPT|1|E|G|385
5OPT|1|E|A|386
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain X
- 40S ribosomal protein S11, putative
- Chain Z
- 40S ribosomal protein S8
Coloring options: