HL_5OPT_030

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

5OPT|1|E|A|1664

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OPT_030 not in the Motif Atlas

Homologous match to HL_4V88_212

Geometric discrepancy: 0.2419

The information below is about HL_4V88_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5OPT|1|E|G|1656
5OPT|1|E|A|1657
5OPT|1|E|C|1658
5OPT|1|E|U|1659
5OPT|1|E|C|1660
5OPT|1|E|A|1661
5OPT|1|E|A|1662
5OPT|1|E|C|1663
5OPT|1|E|A|1664
5OPT|1|E|C|1665

Current chains

Chain E

18S rRNA

Nearby chains

Chain l

Ribosomal protein S20, putative

Chain r

40S ribosomal protein S16, putative