HL_5OPT_033

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUUGAUUC

Length

8 nucleotides

Bulged bases

5OPT|1|E|U|1782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OPT_033 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.2322

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5OPT|1|E|G|1777
5OPT|1|E|U|1778
5OPT|1|E|U|1779
5OPT|1|E|G|1780
5OPT|1|E|A|1781
5OPT|1|E|U|1782
5OPT|1|E|U|1783
5OPT|1|E|C|1784

Current chains

Chain E

18S rRNA

Nearby chains

Chain k

40S ribosomal protein S17, putative