HL_5OPT_038
3D structure
- PDB id
- 5OPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of KSRP in context of Trypanosoma cruzi 40S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GCUCAUCAAAC
- Length
- 11 nucleotides
- Bulged bases
- 5OPT|1|E|A|2135
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5OPT_038 not in the Motif Atlas
- Geometric match to HL_5J7L_029
- Geometric discrepancy: 0.3313
- The information below is about HL_5J7L_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5OPT|1|E|G|2127
5OPT|1|E|C|2128
5OPT|1|E|U|2129
5OPT|1|E|C|2130
5OPT|1|E|A|2131
5OPT|1|E|U|2132
5OPT|1|E|C|2133
5OPT|1|E|A|2134
5OPT|1|E|A|2135
5OPT|1|E|A|2136
5OPT|1|E|C|2137
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain l
- Ribosomal protein S20, putative
- Chain o
- Ribosomal protein S19, putative
- Chain q
- Ribosomal protein S29, putative
- Chain r
- 40S ribosomal protein S16, putative
- Chain u
- 40S ribosomal protein S18, putative
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