HL_5OQL_012

3D structure

PDB id

5OQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUGAUUC

Length

8 nucleotides

Bulged bases

5OQL|1|1|U|833

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OQL_012 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.202

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5OQL|1|1|G|827
5OQL|1|1|G|828
5OQL|1|1|U|829
5OQL|1|1|G|830
5OQL|1|1|A|831
5OQL|1|1|U|832
5OQL|1|1|U|833
5OQL|1|1|C|834

Current chains

Chain 1

35S rRNA

Nearby chains

Chain m

40S ribosomal protein S4

Chain v

40S ribosomal protein S11-like protein