HL_5OQL_014

3D structure

PDB id

5OQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUAUUGGC

Length

9 nucleotides

Bulged bases

5OQL|1|1|G|921

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OQL_014 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.2051

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

5OQL|1|1|G|914
5OQL|1|1|G|915
5OQL|1|1|U|916
5OQL|1|1|A|917
5OQL|1|1|U|918
5OQL|1|1|U|919
5OQL|1|1|G|920
5OQL|1|1|G|921
5OQL|1|1|C|922

Current chains

Chain 1

35S rRNA

Nearby chains

Chain q

40S ribosomal protein S8

Chain v

40S ribosomal protein S11-like protein