HL_5OQL_024

3D structure

PDB id

5OQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAUUUUUG

Length

9 nucleotides

Bulged bases

5OQL|1|1|U|1643

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OQL_024 not in the Motif Atlas

Geometric match to HL_2D6F_005

Geometric discrepancy: 0.388

The information below is about HL_2D6F_005

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

5OQL|1|1|U|1640
5OQL|1|1|U|1641
5OQL|1|1|A|1642
5OQL|1|1|U|1643
5OQL|1|1|U|1644
5OQL|1|1|U|1645
5OQL|1|1|U|1646
5OQL|1|1|U|1647
5OQL|1|1|G|1648

Current chains

Chain 1

35S rRNA

Nearby chains

Chain l

40S ribosomal protein S1