HL_5OSG_002

3D structure

PDB id

5OSG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Leishmania donovani 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUCACUG

Length

8 nucleotides

Bulged bases

5OSG|1|2|C|270

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OSG_002 not in the Motif Atlas

Geometric match to HL_4V88_215

Geometric discrepancy: 0.3292

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5OSG|1|2|C|265
5OSG|1|2|U|266
5OSG|1|2|U|267
5OSG|1|2|C|268
5OSG|1|2|A|269
5OSG|1|2|C|270
5OSG|1|2|U|271
5OSG|1|2|G|272

Current chains

Chain 2

18S rRNA

Nearby chains

Chain h

RNA binding protein, putative