HL_5OT7_031

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

5OT7|1|1|C|1452, 5OT7|1|1|G|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OT7_031 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3201

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

5OT7|1|1|C|1445
5OT7|1|1|U|1446
5OT7|1|1|A|1447
5OT7|1|1|C|1452
5OT7|1|1|G|1456
5OT7|1|1|G|1457

Current chains

Chain 1

16S Ribosomal RNA

Nearby chains

Chain S

30S ribosomal protein S20