HL_5OT7_040

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUUUG

Length

6 nucleotides

Bulged bases

5OT7|1|4|U|156, 5OT7|1|4|U|157

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OT7_040 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.1484

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

5OT7|1|4|C|154|||A
5OT7|1|4|U|155
5OT7|1|4|U|156
5OT7|1|4|U|157
5OT7|1|4|U|158
5OT7|1|4|G|171

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L28