HL_5OT7_042

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

5OT7|1|4|A|229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OT7_042 not in the Motif Atlas

Homologous match to HL_7RQB_007

Geometric discrepancy: 0.2678

The information below is about HL_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02862.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

5OT7|1|4|A|225
5OT7|1|4|G|226
5OT7|1|4|A|227
5OT7|1|4|A|228
5OT7|1|4|A|229
5OT7|1|4|U|230

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains

Chain q

50S ribosomal protein L15