HL_5OT7_049

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

5OT7|1|4|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OT7_049 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.121

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5OT7|1|4|G|410
5OT7|1|4|G|411
5OT7|1|4|A|412
5OT7|1|4|C|413
5OT7|1|4|C|414
5OT7|1|4|A|415
5OT7|1|4|C|416
5OT7|1|4|C|417

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains

Chain q

50S ribosomal protein L15