HL_5OT7_088

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGAUG

Length

6 nucleotides

Bulged bases

5OT7|1|4|G|2207, 5OT7|1|4|U|2218

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OT7_088 not in the Motif Atlas

Geometric match to HL_5SWD_005

Geometric discrepancy: 0.1684

The information below is about HL_5SWD_005

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

5OT7|1|4|C|2205
5OT7|1|4|G|2206
5OT7|1|4|G|2207
5OT7|1|4|A|2208
5OT7|1|4|U|2218
5OT7|1|4|G|2219

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L9

Chain W

50S ribosomal protein L28

Chain g

50S ribosomal protein L2