HL_5OT7_089

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

5OT7|1|4|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OT7_089 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1408

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

5OT7|1|4|C|2248
5OT7|1|4|U|2249
5OT7|1|4|G|2250
5OT7|1|4|G|2251
5OT7|1|4|G|2252
5OT7|1|4|G|2253
5OT7|1|4|C|2254
5OT7|1|4|G|2255
5OT7|1|4|G|2256

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains

Chain V

50S ribosomal protein L27

Chain r

50S ribosomal protein L16