HL_5OT7_090

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

5OT7|1|4|A|2268, 5OT7|1|4|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OT7_090 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.1102

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

5OT7|1|4|C|2264
5OT7|1|4|U|2265
5OT7|1|4|A|2266
5OT7|1|4|A|2267
5OT7|1|4|A|2268
5OT7|1|4|A|2269
5OT7|1|4|G|2270
5OT7|1|4|G|2271
5OT7|1|4|U|2272
5OT7|1|4|A|2273
5OT7|1|4|A|2274
5OT7|1|4|C|2275
5OT7|1|4|G|2276

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains

Chain V

50S ribosomal protein L27

Chain r

50S ribosomal protein L16