HL_5T2A_008

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCUUGUUC

Length

8 nucleotides

Bulged bases

5T2A|1|2|U|326, 5T2A|1|2|U|327

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2A_008 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3545

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5T2A|1|2|G|321
5T2A|1|2|C|322
5T2A|1|2|U|323
5T2A|1|2|U|324
5T2A|1|2|G|325
5T2A|1|2|U|326
5T2A|1|2|U|327
5T2A|1|2|C|328

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 3

eS6