HL_5T2A_011
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCUGAGAAAUAG
- Length
- 12 nucleotides
- Bulged bases
- 5T2A|1|2|A|446
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T2A_011 not in the Motif Atlas
- Homologous match to HL_4V88_195
- Geometric discrepancy: 0.0901
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5T2A|1|2|C|436
5T2A|1|2|C|437
5T2A|1|2|U|438
5T2A|1|2|G|439
5T2A|1|2|A|440
5T2A|1|2|G|441
5T2A|1|2|A|442
5T2A|1|2|A|443
5T2A|1|2|A|444
5T2A|1|2|U|445
5T2A|1|2|A|446
5T2A|1|2|G|447
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 1
- eS4
- Chain 3
- eS6
- Chain 5
- eS8
- Chain AT
- eS24
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