HL_5T2A_013

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAAACAAAACG

Length

12 nucleotides

Bulged bases

5T2A|1|2|A|495, 5T2A|1|2|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2A_013 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.4842

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

5T2A|1|2|C|493
5T2A|1|2|A|494
5T2A|1|2|A|495
5T2A|1|2|A|496
5T2A|1|2|A|497
5T2A|1|2|C|498
5T2A|1|2|A|499
5T2A|1|2|A|500
5T2A|1|2|A|501
5T2A|1|2|A|502
5T2A|1|2|C|503
5T2A|1|2|G|504

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 1

eS4

Chain AT

eS24