HL_5T2A_022

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2A_022 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.1544

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5T2A|1|2|A|1147
5T2A|1|2|G|1148
5T2A|1|2|G|1149
5T2A|1|2|U|1150
5T2A|1|2|G|1151
5T2A|1|2|A|1152
5T2A|1|2|A|1153
5T2A|1|2|A|1154
5T2A|1|2|U|1155
5T2A|1|2|U|1156

Current chains

Chain 2

18S rRNA

Nearby chains

Chain AH

uS11

Chain AN

uS7

Chain B

Large subunit ribosomal RNA; LSU rRNA