HL_5T2A_024

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUUAGAGACC

Length

11 nucleotides

Bulged bases

5T2A|1|2|G|1251

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2A_024 not in the Motif Atlas

Homologous match to HL_4V88_208

Geometric discrepancy: 0.1306

The information below is about HL_4V88_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5T2A|1|2|G|1244
5T2A|1|2|A|1245
5T2A|1|2|U|1246
5T2A|1|2|U|1247
5T2A|1|2|A|1248
5T2A|1|2|G|1249
5T2A|1|2|A|1250
5T2A|1|2|G|1251
5T2A|1|2|A|1252
5T2A|1|2|C|1253
5T2A|1|2|C|1254

Current chains

Chain 2

18S rRNA

Nearby chains

Chain AH

uS11

Chain B

Large subunit ribosomal RNA; LSU rRNA