HL_5T2A_032

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUCAGAAUAA

Length

10 nucleotides

Bulged bases

5T2A|1|2|U|1712

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2A_032 not in the Motif Atlas

Geometric match to HL_4ANG_001

Geometric discrepancy: 0.3398

The information below is about HL_4ANG_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34168.3

Basepair signature

cWW-cWW-F

Number of instances in this motif group

11

Unit IDs

5T2A|1|2|U|1705
5T2A|1|2|U|1706
5T2A|1|2|C|1707
5T2A|1|2|A|1708
5T2A|1|2|G|1709
5T2A|1|2|A|1710
5T2A|1|2|A|1711
5T2A|1|2|U|1712
5T2A|1|2|A|1773
5T2A|1|2|A|1774

Current chains

Chain 2

18S rRNA

Nearby chains

Chain AK

uS9

Chain AO

eS19