HL_5T2A_045
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGUUAGCC
- Length
- 9 nucleotides
- Bulged bases
- 5T2A|1|A|G|255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T2A_045 not in the Motif Atlas
- Homologous match to HL_5TBW_007
- Geometric discrepancy: 0.1995
- The information below is about HL_5TBW_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.12
- Basepair signature
- cWW-cWW-F-tWH
- Number of instances in this motif group
- 16
Unit IDs
5T2A|1|A|G|253
5T2A|1|A|U|254
5T2A|1|A|G|255
5T2A|1|A|U|256
5T2A|1|A|U|257
5T2A|1|A|A|258
5T2A|1|A|G|259
5T2A|1|A|C|260
5T2A|1|A|C|261
Current chains
- Chain A
- LSU-alpha
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain X
- uL24
- Chain p
- uL4
Coloring options: