HL_5T2A_064
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAUGAAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T2A_064 not in the Motif Atlas
- Homologous match to HL_5TBW_026
- Geometric discrepancy: 0.1936
- The information below is about HL_5TBW_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_44398.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
5T2A|1|A|G|1205
5T2A|1|A|A|1206
5T2A|1|A|A|1207
5T2A|1|A|U|1208
5T2A|1|A|G|1209
5T2A|1|A|A|1210
5T2A|1|A|A|1211
5T2A|1|A|C|1212
Current chains
- Chain A
- LSU-alpha
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- 5S ribosomal RNA; 5S rRNA
- Chain g
- eL32
- Chain j
- eL33
- Chain u
- uL30
Coloring options: