HL_5T2A_068
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAGAUAUACAACAUGCAAC
- Length
- 20 nucleotides
- Bulged bases
- 5T2A|1|A|U|1560, 5T2A|1|A|A|1563, 5T2A|1|A|C|1566
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T2A_068 not in the Motif Atlas
- Geometric match to HL_8C3A_054
- Geometric discrepancy: 0.1923
- The information below is about HL_8C3A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_71121.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
5T2A|1|A|G|1555
5T2A|1|A|G|1556
5T2A|1|A|A|1557
5T2A|1|A|G|1558
5T2A|1|A|A|1559
5T2A|1|A|U|1560
5T2A|1|A|A|1561
5T2A|1|A|U|1562
5T2A|1|A|A|1563
5T2A|1|A|C|1566
5T2A|1|A|A|1567
5T2A|1|A|A|1568
5T2A|1|A|C|1569
5T2A|1|A|A|1570
5T2A|1|A|U|1571
5T2A|1|A|G|1572
5T2A|1|A|C|1573
5T2A|1|A|A|1574
5T2A|1|A|A|1575
5T2A|1|A|C|1576
Current chains
- Chain A
- LSU-alpha
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain H
- srRNA4
- Chain P
- uL22
- Chain R
- eL19
- Chain f
- eL31
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