HL_5T2A_078

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACGAGAUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2A_078 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.384

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

5T2A|1|B|A|402
5T2A|1|B|C|403
5T2A|1|B|G|404
5T2A|1|B|A|405
5T2A|1|B|G|406
5T2A|1|B|A|407
5T2A|1|B|U|408
5T2A|1|B|U|409

Current chains

Chain B

LSU-beta

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain k

eL36

Chain r

eL42