HL_5T2A_086
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UCCAGUACG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T2A_086 not in the Motif Atlas
- Homologous match to HL_8C3A_059
- Geometric discrepancy: 0.1693
- The information below is about HL_8C3A_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_34636.1
- Basepair signature
- cWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5T2A|1|B|U|1088
5T2A|1|B|C|1089
5T2A|1|B|C|1090
5T2A|1|B|A|1091
5T2A|1|B|G|1092
5T2A|1|B|U|1093
5T2A|1|B|A|1094
5T2A|1|B|C|1095
5T2A|1|B|G|1096
Current chains
- Chain B
- LSU-beta
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain I
- eL18
- Chain S
- eL21
- Chain Z
- uL15
- Chain r
- eL42
Coloring options: