HL_5T2A_088
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAACAAAUC
- Length
- 9 nucleotides
- Bulged bases
- 5T2A|1|B|A|1151
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T2A_088 not in the Motif Atlas
- Homologous match to HL_8C3A_061
- Geometric discrepancy: 0.1574
- The information below is about HL_8C3A_061
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
5T2A|1|B|G|1150
5T2A|1|B|A|1151
5T2A|1|B|A|1152
5T2A|1|B|C|1153
5T2A|1|B|A|1154
5T2A|1|B|A|1155
5T2A|1|B|A|1156
5T2A|1|B|U|1157
5T2A|1|B|C|1158
Current chains
- Chain B
- LSU-beta
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain L
- eL13
- Chain Z
- uL15
- Chain r
- eL42
Coloring options: