HL_5T2A_089

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2A_089 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.1442

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5T2A|1|B|C|1214
5T2A|1|B|G|1215
5T2A|1|B|U|1216
5T2A|1|B|U|1217
5T2A|1|B|C|1218
5T2A|1|B|A|1219
5T2A|1|B|U|1220
5T2A|1|B|A|1221
5T2A|1|B|G|1222

Current chains

Chain B

LSU-beta

Nearby chains

Chain J

uL16

Chain q

eL40