HL_5T2A_090

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGCAGAAG

Length

8 nucleotides

Bulged bases

5T2A|1|B|G|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2A_090 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.1273

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

5T2A|1|B|C|1271
5T2A|1|B|G|1272
5T2A|1|B|C|1273
5T2A|1|B|A|1274
5T2A|1|B|G|1275
5T2A|1|B|A|1276
5T2A|1|B|A|1277
5T2A|1|B|G|1278

Current chains

Chain B

LSU-beta

Nearby chains

Chain G

Large subunit ribosomal RNA; LSU rRNA

Chain q

eL40

Chain w

uL6