HL_5T2A_093

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGCAAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2A_093 not in the Motif Atlas

Geometric match to HL_7A0S_061

Geometric discrepancy: 0.2926

The information below is about HL_7A0S_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

5T2A|1|B|C|1395
5T2A|1|B|G|1396
5T2A|1|B|C|1397
5T2A|1|B|A|1398
5T2A|1|B|A|1399
5T2A|1|B|A|1400
5T2A|1|B|G|1401

Current chains

Chain B

LSU-beta

Nearby chains

Chain M

uL13

Chain N

eL14

Chain d

uL3