HL_5T2A_097
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AUCAAUUGCAGAAUCAUUAAUU
- Length
- 22 nucleotides
- Bulged bases
- 5T2A|1|C|U|177
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T2A_097 not in the Motif Atlas
- Homologous match to HL_8C3A_075
- Geometric discrepancy: 0.4123
- The information below is about HL_8C3A_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_07882.1
- Basepair signature
- cWW-F-F-tSH-tHS-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5T2A|1|C|A|159
5T2A|1|C|U|160
5T2A|1|C|C|161
5T2A|1|C|A|162
5T2A|1|C|A|163
5T2A|1|C|U|164
5T2A|1|C|U|165
5T2A|1|C|G|166
5T2A|1|C|C|167
5T2A|1|C|A|168
5T2A|1|C|G|169
5T2A|1|C|A|170
5T2A|1|C|A|171
5T2A|1|C|U|172
5T2A|1|C|C|173
5T2A|1|C|A|174
5T2A|1|C|U|175
5T2A|1|C|U|177
5T2A|1|C|A|178
5T2A|1|C|A|179
5T2A|1|C|U|180
5T2A|1|C|U|181
Current chains
- Chain C
- 5.8S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain X
- uL24
- Chain i
- uL29
- Chain o
- eL39
Coloring options: