HL_5T2A_098
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAACGG
- Length
- 7 nucleotides
- Bulged bases
- 5T2A|1|C|A|201, 5T2A|1|C|G|203
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T2A_098 not in the Motif Atlas
- Homologous match to HL_5TBW_075
- Geometric discrepancy: 0.1668
- The information below is about HL_5TBW_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_22523.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
5T2A|1|C|C|198
5T2A|1|C|A|199
5T2A|1|C|A|200
5T2A|1|C|A|201
5T2A|1|C|C|202
5T2A|1|C|G|203
5T2A|1|C|G|204
Current chains
- Chain C
- 5.8S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain V
- uL23
- Chain l
- eL37
- Chain o
- eL39
Coloring options: