HL_5T2A_103
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCUUUCUUU
- Length
- 9 nucleotides
- Bulged bases
- 5T2A|1|E|U|60
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T2A_103 not in the Motif Atlas
- Geometric match to HL_5TBW_037
- Geometric discrepancy: 0.1381
- The information below is about HL_5TBW_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01927.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5T2A|1|E|G|53
5T2A|1|E|C|54
5T2A|1|E|U|55
5T2A|1|E|U|56
5T2A|1|E|U|57
5T2A|1|E|C|58
5T2A|1|E|U|59
5T2A|1|E|U|60
5T2A|1|E|U|61
Current chains
- Chain E
- srRNA1
Nearby chains
- Chain G
- Large subunit ribosomal RNA; LSU rRNA
- Chain H
- srRNA4
- Chain R
- eL19
- Chain T
- eL22
Coloring options: