HL_5T2A_104
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCGUUGUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T2A_104 not in the Motif Atlas
- Geometric match to HL_6UFM_001
- Geometric discrepancy: 0.285
- The information below is about HL_6UFM_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_04642.3
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5T2A|1|E|G|115
5T2A|1|E|C|116
5T2A|1|E|G|117
5T2A|1|E|U|118
5T2A|1|E|U|119
5T2A|1|E|G|120
5T2A|1|E|U|121
5T2A|1|E|U|122
5T2A|1|E|C|123
Current chains
- Chain E
- srRNA1
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain R
- eL19
- Chain e
- eL30
- Chain m
- eL43
Coloring options: