HL_5T2A_105
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCUCGUAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T2A_105 not in the Motif Atlas
- Geometric match to HL_3SKL_006
- Geometric discrepancy: 0.3688
- The information below is about HL_3SKL_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47100.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5T2A|1|E|G|153
5T2A|1|E|C|154
5T2A|1|E|U|155
5T2A|1|E|C|156
5T2A|1|E|G|164
5T2A|1|E|U|165
5T2A|1|E|A|166
5T2A|1|E|C|167
Current chains
- Chain E
- srRNA1
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain R
- eL19
- Chain T
- eL22
- Chain n
- eL38
Coloring options: