HL_5T2A_110

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2A_110 not in the Motif Atlas

Homologous match to HL_8C3A_067

Geometric discrepancy: 0.1327

The information below is about HL_8C3A_067

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

11

Unit IDs

5T2A|1|G|C|96
5T2A|1|G|G|97
5T2A|1|G|A|98
5T2A|1|G|A|99
5T2A|1|G|C|100
5T2A|1|G|G|101

Current chains

Chain G

srRNA2

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain E

srRNA1

Chain H

srRNA4

Chain R

eL19

Chain T

eL22

Chain f

eL31