HL_5T2A_118
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AUCCCGUCCGAUUU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T2A_118 not in the Motif Atlas
- Homologous match to HL_8C3A_228
- Geometric discrepancy: 0.1842
- The information below is about HL_8C3A_228
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50688.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
5T2A|1|D|A|33
5T2A|1|D|U|34
5T2A|1|D|C|35
5T2A|1|D|C|36
5T2A|1|D|C|37
5T2A|1|D|G|38
5T2A|1|D|U|39
5T2A|1|D|C|40
5T2A|1|D|C|41
5T2A|1|D|G|42
5T2A|1|D|A|43
5T2A|1|D|U|44
5T2A|1|D|U|45
5T2A|1|D|U|46
Current chains
- Chain D
- 5S rRNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain K
- uL5
- Chain s
- uL18
Coloring options: