HL_5T2C_008
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CUUGGGAAUG
- Length
- 10 nucleotides
- Bulged bases
- 5T2C|1|A|G|294, 5T2C|1|A|A|295, 5T2C|1|A|A|296
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T2C_008 not in the Motif Atlas
- Homologous match to HL_8C3A_008
- Geometric discrepancy: 0.2
- The information below is about HL_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_77436.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
5T2C|1|A|C|289
5T2C|1|A|U|290
5T2C|1|A|U|291
5T2C|1|A|G|292
5T2C|1|A|G|293
5T2C|1|A|G|294
5T2C|1|A|A|295
5T2C|1|A|A|296
5T2C|1|A|U|297
5T2C|1|A|G|298
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain U
- 60S ribosomal protein L27a
- Chain i
- 60S ribosomal protein L36a
- Chain r
- 60S ribosomal protein L13
- Chain t
- 60S ribosomal protein L15
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