HL_5T2C_035

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

5T2C|1|A|G|2421, 5T2C|1|A|U|2425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2C_035 not in the Motif Atlas

Homologous match to HL_8C3A_032

Geometric discrepancy: 0.2241

The information below is about HL_8C3A_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

5T2C|1|A|A|2420
5T2C|1|A|G|2421
5T2C|1|A|C|2422
5T2C|1|A|A|2423
5T2C|1|A|G|2424
5T2C|1|A|U|2425
5T2C|1|A|U|2426

Current chains

Chain A

28S rRNA

Nearby chains

Chain J

60S ribosomal protein L17

Chain L

60S ribosomal protein L19