HL_5T2C_059

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

ACUGGGGCGGU

Length

11 nucleotides

Bulged bases

5T2C|1|A|G|4195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2C_059 not in the Motif Atlas

Geometric match to HL_4V83_139

Geometric discrepancy: 0.3666

The information below is about HL_4V83_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53597.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

5T2C|1|A|A|4192
5T2C|1|A|C|4193
5T2C|1|A|U|4194
5T2C|1|A|G|4195
5T2C|1|A|G|4196
5T2C|1|A|G|4197
5T2C|1|A|G|4198
5T2C|1|A|C|4199
5T2C|1|A|G|4200
5T2C|1|A|G|4201
5T2C|1|A|U|4202

Current chains

Chain A

28S rRNA

Nearby chains

Chain V

60S ribosomal protein L29

Chain p

60S ribosomal protein L10-like