HL_5T2C_068

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2C_068 not in the Motif Atlas

Geometric match to HL_4WF9_058

Geometric discrepancy: 0.171

The information below is about HL_4WF9_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

5T2C|1|A|U|4497
5T2C|1|A|U|4498
5T2C|1|A|G|4499
5T2C|1|A|U|4500
5T2C|1|A|U|4501
5T2C|1|A|C|4502
5T2C|1|A|A|4503

Current chains

Chain A

28S rRNA

Nearby chains

Chain E

60S ribosomal protein L3