HL_5T2C_084

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2C_084 not in the Motif Atlas

Homologous match to HL_4V88_194

Geometric discrepancy: 0.3398

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

5T2C|1|AA|U|416
5T2C|1|AA|C|417
5T2C|1|AA|A|418
5T2C|1|AA|G|419
5T2C|1|AA|G|420
5T2C|1|AA|G|421

Current chains

Chain AA

18S rRNA

Nearby chains

Chain AJ

40S ribosomal protein S2

Chain AL

40S ribosomal protein S9

Chain AP

40S ribosomal protein S15a

Chain Aw

40S ribosomal protein S11