HL_5T2C_108

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUGAACC

Length

8 nucleotides

Bulged bases

5T2C|1|AA|G|1849

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2C_108 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.2908

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

5T2C|1|AA|G|1846
5T2C|1|AA|G|1847
5T2C|1|AA|U|1848
5T2C|1|AA|G|1849
5T2C|1|AA|A|1850
5T2C|1|AA|A|1851
5T2C|1|AA|C|1852
5T2C|1|AA|C|1853

Current chains

Chain AA

18S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain AO

40S ribosomal protein S14

Chain h

60S Ribosomal protein L41