HL_5T2C_114
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUGAAUUGCAGGACACAUUGAUC
- Length
- 23 nucleotides
- Bulged bases
- 5T2C|1|C|A|82, 5T2C|1|C|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T2C_114 not in the Motif Atlas
- Homologous match to HL_8C3A_075
- Geometric discrepancy: 0.5249
- The information below is about HL_8C3A_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_07882.1
- Basepair signature
- cWW-F-F-tSH-tHS-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5T2C|1|C|G|68
5T2C|1|C|U|69
5T2C|1|C|G|70
5T2C|1|C|A|71
5T2C|1|C|A|72
5T2C|1|C|U|73
5T2C|1|C|U|74
5T2C|1|C|G|75
5T2C|1|C|C|76
5T2C|1|C|A|77
5T2C|1|C|G|78
5T2C|1|C|G|79
5T2C|1|C|A|80
5T2C|1|C|C|81
5T2C|1|C|A|82
5T2C|1|C|C|83
5T2C|1|C|A|84
5T2C|1|C|U|85
5T2C|1|C|U|86
5T2C|1|C|G|87
5T2C|1|C|A|88
5T2C|1|C|U|89
5T2C|1|C|C|90
Current chains
- Chain C
- 5.8S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain S
- 60S ribosomal protein L26
- Chain b
- 60S ribosomal protein L35
- Chain d
- 60S ribosomal protein L37
- Chain f
- 60S ribosomal protein L39
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